> ## Documentation Index
> Fetch the complete documentation index at: https://docs.adaptyvbio.com/llms.txt
> Use this file to discover all available pages before exploring further.

# AlphaFold‑Multimer

> Structure prediction for protein complexes with interface confidence metrics (e.g., ipTM)

AlphaFold‑Multimer predicts complex structures and provides confidence metrics such as ipTM for interfaces and pTM for overall topology.

* **Type**: Structure prediction (multimer)
* **Goal**: Propose complex models and interface confidence estimates
* **Input**: Protein sequences (FASTA) with pairing map; optional templates/constraints

Resources: [alphafold](https://github.com/deepmind/alphafold)